iHAP - Integrated Haplotype Analysis Pipeline

Your Name:
Your Email:
Your Institute:
Gene Name:
Population:
Chromosome:
Nucleotide Position:	to
Maximum number of SNPs a block can extend:
Cut-off for allele frequency:

Algorithm for Block Partitioning:	Minimize total number of tag SNPs FGC µ = FTSNP m =

Type of Input Data:	Haplotype Data from HapMap (generated by PHASE) Genotype Data (unrelated individuals) - most likely haplotype pairs identified from PL-EM Genotype Data (unrelated individuals) - haplotypes and frequencies from PL-EM Genotype Data (general pedigrees)

Method for Block Definitions:	Common Haplotypes α = β = LD Measure D’ α = β = Four-Gametes Test α =

Method for tag SNP Definitions:	Fraction of Common Haplotypes distinguished by tag SNPs α = β = All Common Haplotypes β = Haplotype Diversity α = β = Haplotype Entropy α = β = Haplotype Determination Coefficient α = β = LD Measure (r-square) α = β = All Common Haplotypes β = k = Minimum Number of Blocks

Permutation Test:	Yes : Number of Permutations = No

Force Tag SNP Selection:	Yes No